Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttggtttgtgaattttgtatctgccggctacgatgactttgagatttttaatgaatgtcagctaaaagcgtcagatatttgtggtgtttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGC

Basic information

species Arabidopsis thaliana
transcript AT5G14030.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022134|gb|DR317887.1|DR317887
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAGATAGCTGGGATAAAAAGACTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATA-ATAGCTGGGATAAAAAGACTT
EST: gi|125257408|gb|EL271493.1|EL271493
EST:     CGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGAATAAAAAGACTT
genomic: CGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGA-TAAAAAGACTT
EST: gi|86022142|gb|DR317895.1|DR317895
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATAYCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164017091|gb|ES145907.1|ES145907
EST:     TAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAAGACTT
genomic: TAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAA-GACTT
EST: gi|116459815|gb|EG502407.1|EG502407
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022135|gb|DR317888.1|DR317888
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164032861|gb|ES083321.1|ES083321
EST:     AACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: AACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022136|gb|DR317889.1|DR317889
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022143|gb|DR317896.1|DR317896
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022153|gb|DR317906.1|DR317906
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|125196835|gb|EL211789.1|EL211789
EST:     TAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: TAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|116399796|gb|EG442388.1|EG442388
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022138|gb|DR317891.1|DR317891
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022144|gb|DR317897.1|DR317897
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022129|gb|DR317882.1|DR317882
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022131|gb|DR317884.1|DR317884
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022141|gb|DR317894.1|DR317894
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022151|gb|DR317904.1|DR317904
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022157|gb|DR317910.1|DR317910
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164222940|gb|ES147401.1|ES147401
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAG
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAG
EST: gi|86022137|gb|DR317890.1|DR317890
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022146|gb|DR317899.1|DR317899
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164050009|gb|ES159588.1|ES159588
EST:     GGCGCCGAACGCGTCNCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAG
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAG
EST: gi|86022158|gb|DR317911.1|DR317911
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022149|gb|DR317902.1|DR317902
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACMGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022148|gb|DR317901.1|DR317901
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|116459826|gb|EG502418.1|EG502418
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022140|gb|DR317893.1|DR317893
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022150|gb|DR317903.1|DR317903
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022145|gb|DR317898.1|DR317898
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|125063875|gb|EL131697.1|EL131697
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATA
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATA
EST: gi|116459820|gb|EG502412.1|EG502412
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164089039|gb|ES022504.1|ES022504
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022133|gb|DR317886.1|DR317886
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022159|gb|DR317912.1|DR317912
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|116459814|gb|EG502406.1|EG502406
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|116459825|gb|EG502417.1|EG502417
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022132|gb|DR317885.1|DR317885
EST:     GGCGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|124790775|gb|EH880454.1|EH880454
EST:     CGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: CGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|164194636|gb|ES180664.1|ES180664
EST:     TAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAAGACTT
genomic: TAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAA-GACTT
EST: gi|86022139|gb|DR317892.1|DR317892
EST:     GGSGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
EST: gi|86022147|gb|DR317900.1|DR317900
EST:     GGSGCCGAACGCGTCTCCGTTTCCTACGATATCTATAACCAAGGATCCTC                         GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT
genomic: GGCGCCGAACGCGTCTCCGTTTCCTACGACATCTATAACCAAGGATCCTCgttagttctc ... ttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttaatgaatgtcagctaaaagcgtcagatatttgtggtgtttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGC
                 agctaaa  putative branch site (score: 3)
                                            tttgctctc  putative PPT
     ttaatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttggtttgtgaattttgtatctgccggctacgatgactttgagatttttaatgaatgtcagctaaaagcgtcagatatttgtggtgtttgctctcagGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
gatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaag