1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCTCCATGGTGGTTTGTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaaggttggtacggtgctgttttctgtttaacagttaaacacagtttcaaaacttgtaagaattagagaacacactttaattttggtgttgcaga...
species | Arabidopsis thaliana |
transcript | AT5G14030.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459826|gb|EG502418.1|EG502418
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG CTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGACEST: gi|116459825|gb|EG502417.1|EG502417
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG CTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCATGGTGGTTTGTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaaggttggtacggtgctgttttctgtttaacagttaaacacagtttcaaaacttgtaagaattagagaacacactttaattttggtgttgcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaca