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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttgaccttctaaggactattctttcaatcatctagtcagagtttttttcttttcttctcaatattgactttcattgctatcttctgttgtgtcttggatgttgctcttgatgctgccaaaataatctcag

Basic information

species Arabidopsis thaliana
transcript AT5G14030.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124752456|gb|EH842586.1|EH842586
EST:     CTAGATATTCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: CTAGATA-TCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|116459814|gb|EG502406.1|EG502406
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|116459820|gb|EG502412.1|EG502412
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|125234229|gb|EL248314.1|EL248314
EST:     ATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: ATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|86022138|gb|DR317891.1|DR317891
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|116459815|gb|EG502407.1|EG502407
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|164236015|gb|ES059156.1|ES059156
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|86022144|gb|DR317897.1|DR317897
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|164048468|gb|ES140634.1|ES140634
EST:     AACCTTTGGACGTG                         GCCAAG
genomic: AACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|124926105|gb|EL003999.1|EL003999
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAGAGGTTG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAGAGGTTG
EST: gi|116459826|gb|EG502418.1|EG502418
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|116459825|gb|EG502417.1|EG502417
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|125133448|gb|EL174920.1|EL174920
EST:     CCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: CCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|124759017|gb|EH849147.1|EH849147
EST:     CCTTTGGACGTG                         GCCAAG
genomic: CCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|124927602|gb|EL005326.1|EL005326
EST:     TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG                         GCCAAG
genomic: TACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG
EST: gi|124746719|gb|EH837031.1|EH837031
EST:     CTTTGGACGTG                         GCCAAG
genomic: CTTTGGACGTGgtaaatttga ... ataatctcagGCCAAG