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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGACGCAATGCATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGgtaagtttaactgatattattttgtttttcatgccatagcaccttaaaattgctctggcaagtctctgtctttcctagttttttgtttgtgtctgttggatacaattacagtttctgtgccagggaatttgaggactttcagtatagaaaatgaaagttgatacattttatatatccag

Basic information

species Arabidopsis thaliana
transcript AT5G11480.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079232|gb|DR374989.1|DR374989
EST:     CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGG                         GTATGCATCAGCACCGCATGWACTCAAACAAGACTGGAACAAATTCACCAA
genomic: CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGgtaagtttaa ... atatatccagGTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAA
EST: gi|116474051|gb|EG516643.1|EG516643
EST:     CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGG                         GTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAA
genomic: CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGgtaagtttaa ... atatatccagGTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAA
EST: gi|124767573|gb|EH857703.1|EH857703
EST:     CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGG                         GTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAA
genomic: CATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGgtaagtttaa ... atatatccagGTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAA