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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatcttagcctatttactcaccgatgattcattgtgtttagagttctttttttgggtctcttttgttatattttaacatgctattttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTCGCATCTTAGCAGCGATGCGAGAGTCGACCATGACGAAATCATCAGACG

Basic information

species Arabidopsis thaliana
transcript AT5G10760.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485043|gb|EG527635.1|EG527635
EST:     AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAG                         CATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
genomic: AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAGgtgattatct ... ttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
EST: gi|116485036|gb|EG527628.1|EG527628
EST:     AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAG                         CATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
genomic: AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAGgtgattatct ... ttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
EST: gi|116485031|gb|EG527623.1|EG527623
EST:     TGTCCCTTC-TCAAAAG                         CATCTAATACCAAGTCGTCGCTGCGCGT-GTGCACATGCATGGTGCGTGCT
genomic: TGTCCCTTCTTCAAAAGgtgattatct ... ttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
EST: gi|116485029|gb|EG527621.1|EG527621
EST:     AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAG                         CATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT
genomic: AGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTCTTCAAAAGgtgattatct ... ttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttctttttttgggtctcttttgttatattttaacatgctattttcttcacagCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTCGCATCTTAGCAGCGATGCGAGAGTCGACCATGACGAAATCATCAGACG
                              ttttaac  putative branch site (score: 2)
 ctattttcttc  putative PPT
 ttttgttatattttaa  TA-rich tract