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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGgtaataatatgtgtctttctgttgttttctccctcgtgtctgtaagattttctttgttttgagtaaccgtgccctgcaacaatgacaatgttacctgaatctaagaaatgtaggtcttttgtttctgtag

Basic information

species Arabidopsis thaliana
transcript AT5G10320.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G024119_T04 (Zea mays), 5'ss of exon 5
CAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGgt------aataatatgtgtctttctgttgttttctccctcgtgtctgtaagattttctttgttttgagtaaccgtgccctgcaacaatgacaatgttacctgaatctaagaaatgtaggtcttttgtttctgtag
 ||||| || || ||||||||| | |||||| ||||| | || ||| | || ||||  ||| ||||||| ||||| ||||||||||||||||||||||||||      ||     ||     | ||      ||    ||  || || || | | | | |||     | ||| | |  | ||   ||                                                 
TAGGTCGTACTTTATGTTTCATGGTTTGGATGTTAACAAGCCACAAGCCATTTTCAAGTATCTACCTGTTCTTTCTTTCACAGAGAGTTACATATATCAGgttttttcaacctcttgaaatgtgcttcaaactttcatcttatggct-tatgttctgcattgaacaaactaaacatttcttgttgcag------------------------------------------------

upper sequence: AT5G10320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G01920.1 (Glycine max), 5'ss of exon 4
CAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGgta-ataatatgt----gtctttctgttgttttctccctcgtgtc-tgtaagattttctttgttttgagtaaccgtgccctgcaacaatgacaatgttacctgaatctaagaaatgtaggtcttttgtttctgtag
||| |||||||| ||||||||  | |||||| | | | | || |||||||| |||| ||| |||||| | |||||||||||||||||||| || ||||||||| ||  ||  |    ||  ||    || | ||  | | |     ||    ||||| ||   |   || || | |    |   |||| || | ||||                                      
CAGATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGgtatatgctagattgatgttattaaactgatatcatcttggcaaagtgggctatttttttctctcctaggaagcatatgttttgacaaagaaattgttca------------------------------------

upper sequence: AT5G10320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G38020.1 (Glycine max), 5'ss of exon 4
CAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGgtaata-----atatgtgtcttt---ctgttgttttctccctcgtgtctgtaagattttctttgttttgagtaaccgtgccctgcaacaatgacaatgttacctgaatctaagaaatgtaggtcttttgtttctgtag
||| ||||| || ||||||||  | |||||| | | | | || |||||||| |||| ||| |||||| | |||||||||||||||||||| || |||||||||  |     ||   |||  ||   ||| | |  ||||      ||  |  |  |||| ||| |  |  | |||  |    |   ||||  | | ||||                                      
CAGATCTTACTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGgtataagctagattgatgttattaaactgatatcatctcagcaaagtgggctattttttttttctcctaggaaac-atatgttttgacaaaaaaattgttc-------------------------------------

upper sequence: AT5G10320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G01920.2 (Glycine max), 5'ss of exon 4
CAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGgta-ataatatgt----gtctttctgttgttttctccctcgtgtc-tgtaagattttctttgttttgagtaaccgtgccctgcaacaatgacaatgttacctgaatctaagaaatgtaggtcttttgtttctgtag
    |||||||| ||||||||  | |||||| | | | | || |||||||| |||| ||| |||||| | |||||||||||||||||||| || ||||||||| ||  ||  |    ||  ||    || | ||  | | |     ||    ||||| ||   |   || || | |    |   |||| || | ||||                                      
---ATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGgtatatgctagattgatgttattaaactgatatcatcttggcaaagtgggctatttttttctctcctaggaagcatatgttttgacaaagaaattgttca------------------------------------