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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccataaagtttaggtttttcgaatttttcagttttgacgctccgtaaaaaaaaaaatctaaaattcattcttctttcaagGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTCTTACCGAAA

Basic information

species Arabidopsis thaliana
transcript AT5G10320.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164232511|gb|EL995186.1|EL995186
EST:     GTCCTTTTCCTG                         GTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCT
genomic: GTCCTTTTCCTGgtaaccataa ... ttctttcaagGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagttttgacgctccgtaaaaaaaaaaatctaaaattcattcttctttcaagGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTCTTACCGAAA
                              atctaaa  putative branch site (score: 3)
                                      ttcattcttctttc  CT-rich tract
                   taaaaaaaaaaatcta  TA-rich tract