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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAGATATCGAAGAGCAATGTCGTGGACGATATGGTTGGTAGCAACGGAATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTGTGGTCATTAAGgtgattaattttactattaattataattatccaatctaacaaatcacattaacataaattatactattggatggtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G10170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 7
AAAGGAGATATCGAAGAGCAATGTCGTGGACGATATGGTTGGTAGCAACGGAATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTGTGGTCATTAAGgtgatt-----aattttactattaattataattatccaatctaacaaatcacattaacataaattatact-attggatggtgttgcag-------------------
 |||||||| || ||||||||||| || ||||| |||||||  |||||||  ||  |||| |||||||| || ||||||||||| || |||||||| |||||   |     ||   | || ||  || ||  |||   |  | | |       ||    | | | || || | ||| |    ||  |                    
CAAGGAGATCTCCAAGAGCAATGTTGTCGACGACATGGTTGCCAGCAACGCTATCCTGTATGAGCCTGGGGAGCACCCTGACCATGTGGTGGTCATCAAGgtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcag