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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattatacttatttaactattgttgaatgtgacttacaaaagtagaaaacaagatctcttttttatactttttttaattagtggatattttggtcggcaaattaaactttgaaaaacatcagtaaatagagaaaataataaatgattaatgggttatgaaaatgatagGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTCAAA

Basic information

species Arabidopsis thaliana
transcript AT5G10170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
gtacattatacttatttaactattgttgaatgtgacttacaaaagtagaaaacaagatctcttttttatactttttttaattagtggatattttggtcggcaaattaaactttgaaaaacatcagtaaatagag--aaaataataaatgattaatgggttatgaaaatgatagGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTCAAA
                                                                        |   ||| | | |  || |  | |     |  |  |  | || ||| ||| | |  ||  |   | | ||  | || ||| ||   |||| |  ||   ||||||| || || || ||||| ||||| ||||||||||| |||||||||||| | ||||| ||||||||  | || |||||||| ||||| || || || |
-----------------------------------------------------------------------gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgatataatttata--ttataatgat--cagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125272071|gb|EL286156.1|EL286156
EST:     CATTTAATGGTGAAGAAATCTATGCTCCTTTCAAAAGTCTTCTCCCCATG                         GTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGA
genomic: CATTTAATGGTGAAGAAATCTATGCTCCTTTCAAAAGTCTTCTCCCCATGgtacattata ... aaaatgatagGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatcagtaaatagagaaaataataaatgattaatgggttatgaaaatgatagGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTCAAA
                              gattaat  putative branch site (score: 3)
       agtaaatagagaaaat  TA-rich tract