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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGTCTAAAGAGAAATCATATGTAATTGCTCTTCTTCTATCTTTGCTTCTCTGTCTTTCTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGgtctggtatatataattgtctatgcatatttttatctgttcaagttatcacattatttttgaaagaatcctgaggaaagctcaaccaaatatagctcgaatgttttatgatatttttgatggtagttttggaaaacaaaacctacaagtgtgtataatgttcaacattttttctag

Basic information

species Arabidopsis thaliana
transcript AT5G08760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124823589|gb|EH908455.1|EH908455
EST:     CCAACTACAACGCAG                         TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: CCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
EST: gi|125224119|gb|EL238204.1|EL238204
EST:     CTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAG                         TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: CTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
EST: gi|125209761|gb|EL224715.1|EL224715
EST:     TCTTTCTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAG                         TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: TCTTTCTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA