Sequence
atgc intronic sequence ATGC exonic sequencegtctggtatatataattgtctatgcatatttttatctgttcaagttatcacattatttttgaaagaatcctgaggaaagctcaaccaaatatagctcgaatgttttatgatatttttgatggtagttttggaaaacaaaacctacaagtgtgtataatgttcaacattttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAAGTCCACCAACAA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G08760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124823589|gb|EH908455.1|EH908455EST: CCAACTACAACGCAG TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: CCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
EST:
gi|125224119|gb|EL238204.1|EL238204EST: CTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAG TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: CTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
EST:
gi|125209761|gb|EL224715.1|EL224715EST: TCTTTCTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAG TTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
genomic: TCTTTCTTTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGgtctggtata ... ttttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagttttggaaaacaaaacctacaagtgtgtataatgttcaacattttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAAGTCCACCAACAA
cattttttct CT-rich tract
aacatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctggtatatataattgtctatgcatatttttatctgttcaagttatcacattatttttgaaagaatcctgaggaaagctcaaccaaatatagctcgaatgttttatgatatttttgatggtagttttggaaaacaaaacctacaagtgtgtataatgttcaacattttttctagTTACTACAAGGTACTCGGATTCTCCTCGATGCGCCAATGGATCTTCTGCAAGTCCACCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC