1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaggaaactttgcctctctgtgtacattatctgcatatttcgtcgtatcttgtattagctatgatcacagtatttgactcaatggaatgctagttggtactttctctgtggattttgactctttcccatcatgctgacttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTTGATGCTTGATGGAAACCGCATCAGCTGTTTGC
species | Arabidopsis thaliana |
transcript | AT5G07910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040850|gb|DR336605.1|DR336605
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|116482301|gb|EG524893.1|EG524893
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040844|gb|DR336599.1|DR336599
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040841|gb|DR336596.1|DR336596
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAEST: gi|86040848|gb|DR336603.1|DR336603
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTA
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040840|gb|DR336595.1|DR336595
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86059031|gb|DR354788.1|DR354788
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040849|gb|DR336604.1|DR336604
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTEST: gi|86040851|gb|DR336606.1|DR336606
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
EST: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG TTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
genomic: CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGgtgaggaaac ... cttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTT
gttggtactttctctgtggattttgactctttcccatcatgctgacttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTTGATGCTTGATGGAAACCGCATCAGCTGTTTGC
tgctgac putative branch site (score: 2)
ctttt CT-rich tract
attttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggaaactttgcctctctgtgtacattatctgcatatttcgtcgtatcttgtattagctatgatcacagtatttgactcaatggaatgctagttggtactttctctgtggattttgactctttcccatcatgctgacttttggcagTTAATAGCTGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTTGATGCTTGATGGAAACCGCATCAGCTGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT