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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttctgcttcattttgatttctttcttcattgacgtgttaagagtaatagctgagggactttgtatttgaccatatttatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G07910.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040842|gb|DR336597.1|DR336597
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040850|gb|DR336605.1|DR336605
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|116482301|gb|EG524893.1|EG524893
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040844|gb|DR336599.1|DR336599
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040841|gb|DR336596.1|DR336596
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040848|gb|DR336603.1|DR336603
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040840|gb|DR336595.1|DR336595
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAANAAGATTN                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040843|gb|DR336598.1|DR336598
EST:     TGAAATGGAGAGAGCMGTGCGAACWCTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTNATCAATATGCAGCGTCTGTT
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGTT
EST: gi|86040847|gb|DR336602.1|DR336602
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAG
EST: gi|86059031|gb|DR354788.1|DR354788
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040849|gb|DR336604.1|DR336604
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
EST: gi|86040851|gb|DR336606.1|DR336606
EST:     TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTG                         CTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG
genomic: TGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttc ... atttatgcagCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATTTCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAAGATTGgtatgccttctgcttcattttgatttctttcttcattgacgtgttaagagtaatagctgagggactttgtatttgaccatatttatgcag

- - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - -  GAGCAG