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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATTCGTCCATTCCTTCTCCCATCGAAAGCCTAAGCAACATCACATTTAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTGgtaagttcatctaaatgtttagttacttgcgtctcaagttgaaacaaaccctaacgccaactcttgtggatcgacgtag

Basic information

species Arabidopsis thaliana
transcript AT5G06720.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415273|gb|EG457865.1|EG457865
EST:     TAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTG                         GTGCGCATACGTTCGGGCGTGCTCGATGTGGA
genomic: TAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTGgtaagttcat ... atcgacgtagGTGCGCATACGTTCGGGCGTGCTCGATGTGGA
EST: gi|86080257|gb|DR376014.1|DR376014
EST:     GAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTG                         GTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAACAACAGACTAT
genomic: TAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTGgtaagttcat ... atcgacgtagGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAACAACAGACTAT
EST: gi|116474725|gb|EG517317.1|EG517317
EST:     TAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATTTG                         GTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAACAACAGACTAT
genomic: TAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTGgtaagttcat ... atcgacgtagGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAACAACAGACTAT