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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGTTGATAATATCAAGACTGCCCTCGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGgtaactctacacgttctttgtggacatatgaaacaaaacataactaaaaattactgtggtataattctatttagttattgttaagatacgtttgatcatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G06720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G33080.1 (Glycine max), 5'ss of exon 2
CGTTGTTGATAATATCAAGACTGCCCTCGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGgtaactc--tacacgttctttgtggaca---------tatgaaacaaa---acataac-taaaaattactgtggtataattctatttagttattgtta-------agatacgtttgatcatcttcag
 || || || || || |||||  |  | |||||  | |||||||||||||| |||||  ||||  || | ||||||||  |||| |||||||||||||||||||||   ||    ||  | || ||           |    | ||||   | ||| |  |||||    ||| |    |||   |||||      | |         |||   |  || || | |||
TGTAGTGGACAACATAAAGACATCTGTTGAAAATTCATGCCCTGGTGTTGTATCTTGTGCTGATATTCTTGCCCTTGCTGCTGAAGCTTCTGTGTCTTTGgtaacttgttattaattaatagttgatgattctccttttcttatcaaatttatatagcacaaaaaaggatgtagaggtatttactttagagggcataacataactgcatattatatattatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415273|gb|EG457865.1|EG457865
EST:     TCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTG                         GCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATAGTCTCACG
genomic: TCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGgtaactctac ... tcatcttcagGCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATAGTCTCACG
EST: gi|116415274|gb|EG457866.1|EG457866
EST:     TCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTG                         GCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATAGTCTCACG
genomic: TCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGgtaactctac ... tcatcttcagGCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATAGTCTCACG