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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaagaacgcactcatttagctttattcatatgataatttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G03540.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os11g05880.1 (Oryza sativa), 5'ss of exon 8
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaagaacgcactcatttagctttattcatatgataatttttcag
|||| |||||||| |||||||| ||||||||||  ||||||||||||||  |||| || |||||||| ||||||||||| |||||||||||||| || |||||| ||    | |||  ||  | | |  |           |  |||  ||| | |   |  | ||  |||||||   || |||      |  ||  ||||
AAAATAACTTGGATGGAAAATCTAAACAGTACAGGGATCCTGCATTGACCTACTTATTTCTGATGAATAACATTCATTATATGGTCAGATCTGTTCGTAGgtatgtttgcctcctctctttgaatctgca-----------tcctat--aaatactggcaatatgc--tcatttaatgttgttct----gtgtttcctcag

upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os12g06270.1 (Oryza sativa), 5'ss of exon 8
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaagaacgcactcatttagctttattcatatgataatttttcag------
| || ||||| || || ||||| || ||||| || ||||||||||||||  |  | || || |||||||||||||| || ||||| |||||||| ||||||||| ||  || |   |||| |  |      | || | |  |   |  ||     |  || | | | ||||| |     || | | |||    |||   |       
AGAATAACTTAGATGGGAAATCTAAGCAGTATAAGGATCCTGCATTGACCTATATATTTCTTATGAACAACATTCACTATATGGTTAGATCTGTCCGCAGgtatgttccttgttatgtttcaggt------gttgttttcctggaagcaagcctgttcaata-ctccctcatgtcttcatacttagatgtcggtttagtatattaca

upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G074530_T01 (Zea mays), 5'ss of exon 2
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaagaacgcactcatttagctttattcatatgataatttttcag
|||| || || || | |||| | ||||| ||||| |||||||||||||  ||| | ||  ||||||| |||||||| || || |||| |||||| ||||||||| || || | |    | |  ||   |||   |   |     || |      |  |    |  | ||| |||    | | |||                
AAAATAATTTAGAAGCAAAAGCAAAACAATACAAGGATCCTGCATTGATGCACATATTTTTGATGAATAACATTCACTATATTGTCAAATCTGTCCGCAGgtatgttcttataccaagtaatgctaggaagaaag---taacaatagtgtgtgtactaccttatactctcttttc-tgtcactcag---------------

upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 8
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaaga-acgcac-tcatt--tagctttattcatatgataatttttcag
||| ||| ||||| || ||||| || ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||||||||| |||||||||| |||| | ||  | |   | | |  ||||  ||   |  | | |   | ||| ||   |       | |||  ||| |  |||   | || || || |   |||||||
AAACCAATTTGGATGGGAAATCTAAGCAGTATAAAGATCCTGCTTTGACTCACTTATTTCTTATGAACAATATTCACTACATGGTCCGATCTGTGCGTAGgtttgtt--tctagacttctgtacttccaaacttccttttgaaatgttataagtttgtcttccatgcagatcactgatagtgcttttgatgtgttg--ttttcag

upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S36_119V6.1 (Physcomitrella patens), 5'ss of exon 9
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaactttaaaggctgatctggttttattaaaaaaataaaagaac-gcactcatttagctttattcatatgataatttttcag-----------------------
||  |||  |||| |||||| |||||  ||||| |||  ||||  |  | || |||||||||||||||||||||||||||||||| |  ||||| |||||||||  ||     ||  | || |    |    ||  | |  |   ||||  | | | || |  |     |  |||| || | ||  | |||   ||| | |                        
AAGCCAATCTGGAAGGAAAAGCGAAATTGTACAGAGACACTGCGCTTTCCCATTTGTTCCTGATGAACAACATTCATTACATGGTGAAGTCTGTCCGCAGgtatcgta----cctactgtagatgccaccaactc-tttcttcaaattatcacactgaatgttctatttttttttaactctctt--tctgaatttttcttaattcgaacacaatggatgatgcag

upper sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S59_232V6.1 (Physcomitrella patens), 5'ss of exon 8
AAAACAACTTGGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAACATTCATTACATGGTCAGATCTGTGCGCAGgtatattatttttctcgtttaaac--tttaaaggctg-atctggttttattaaaaaaataaaagaacgcac-----tcatttagctttattcatatgataatttttcag---------------
|||  ||  | || || ||| |||||   ||||||||   |||  |  | ||||||||||||||||| || || ||||| ||||| |||||||| ||||||||   ||| |         |  |   |      ||| |  |  || || ||||   ||   | |||  |      || |||  || |||   | |  | ||||   |                
AAACTAATCTAGAAGGGAAAGCGAAATTATACAAAGACGTTGCGCTTTCTCACTTGTTCCTGATGAATAATATACATTATATGGTGAGATCTGTCCGCAGgtaatatatgtcgactaaacaggcgactgccccactgcaagtcattgtactaaatgtattgcataacctatatgaatcctttctctatatatttttcctcatttcataataatgactcgtgcag