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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAATCCTCATTCCGTCACGGGTGTTGCCACTTTTGCATGACTTGGCACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGgtgaactattgattcttggtcattcatcctgtatgtcgtacagttcattttcaaatcaggctcttagcttaaattttcaactaataattgtagcatgagt...

Basic information

species Arabidopsis thaliana
transcript AT5G03540.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G17500.1 (Glycine max), 5'ss of exon 1
TTCCAATCCTCATTCCGTCACGGGTGTTGCCACTTTTGCATGACTTGGCACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGgtgaactattgattcttggtcattcatcctgtatgtcgtacagttcattttcaaatcaggctcttagcttaaattttcaactaataattgtagcatgagt----
||||  | || || ||  || |  | ||||| ||  |  || | ||  | |||||||||||||| |||||||||||||||||||||||  ||   || |||| ||        |||||    ||  |  | ||    | | ||   |||| |       | || |    || ||    |    ||||  ||||  |||      
TTCCTGTTCTTATACCACCAAGAATTTTGCCGCTGCTCAATAATTTAACCCAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAGCATACAGgtaaagctccttctcttgactgttt-tattttaaaaggaaaaggaaatttccttgctgtggtcctc-tatagatgcatattgcataa--gtagtctgaactgaa

upper sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 4
TTCCAATCCTCATTCCGTCACGGGTGTTGCCACTTTTGCATGACTTGGCACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGgtgaactattgattcttggtcattc-atcctgtatgtcgtac-agttcattttcaaatcaggctcttagcttaaattttcaactaataattgtagcatgagt
 ||| || || |||||  || |  | ||||||||  |  || | ||  | |||||||||||||| |||||||||||||||||||||||  |||  || |||| ||        |||||    ||  ||  |  | |    |  |  |    ||   ||    ||||     |  || ||  | || || |   | | |||  
CTCCTATTCTTATTCCACCAAGAATTTTGCCACTGCTCAATAATTTAACCCAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAACATACAGgtaaatctccttctcttgactgttttattttaaaaggaaaaggaaattgccttactatagccctctctatatgcatattgcattagtagtctgaac-tgaa-

upper sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 4
TTCCAATCCTCATTCCGTCACGGGTGTTGCCACTTTTGCATGACTTGGCACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGgtgaactattgattcttggtcattcatcctgtatgtcgtacagttcattttcaaatcaggctcttagcttaaattttcaactaataattgt-----agcatgagt
 |||    || || ||  || |  | ||||||||  | ||||| || || |||||||||||| | |||||||||||||||||||| ||  |||| || |||| |     || || ||| | | |  ||   |||||   | |    |   |  || | | ||  |||   |  | |  |  | | || | |     |||||||  
CTCCTGCTCTTATACCACCAAGATTTTTGCCACTGCTACATGATTTAGCTCAGCAAATGGTTGAAGCTGGTCACCAACAACAGTTACTCAAAATATACAGgtaa-----tgcttgttgtttagttgtctgttatgttacagaaggaaaagtttaaactgccttgtagtagatctctatatttgaaaaatcttactgagcatgaaa