1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaagttctaaacctttttaaaccgtaagttatcggatcggaccggatctcagatatcattaaatctttttcgtacatgcatattttcagACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTATCAACGCAGCTTTAAACGACGAGCTATTCTTCGGGATTGCGGGACACAA
species | Arabidopsis thaliana |
transcript | AT5G03260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCATTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAAC ACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTAEST: gi|116415489|gb|EG458081.1|EG458081
genomic: TACCATTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAACgtaaaagttc ... atattttcagACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTA
EST: TCATACCATTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAAC ACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTA
genomic: TCATACCATTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAACgtaaaagttc ... atattttcagACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTA
gatcggaccggatctcagatatcattaaatctttttcgtacatgcatattttcagACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTATCAACGCAGCTTTAAACGACGAGCTATTCTTCGGGATTGCGGGACACAA
tattttc CT-rich tract
atatcattaaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagttctaaacctttttaaaccgtaagttatcggatcggaccggatctcagatatcattaaatctttttcgtacatgcatattttcagACACGTTCGTCATAGAGGCCGAAGCGGGTAAAACATATCTTCTAAGGATTATCAACGCAGCTTTAAACGACGAGCTATTCTTCGGGATTGCGGGACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT