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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaaaataaaacaaaaccggtcggtttagtcccatccttaaatttttctttttctcattgccttggttttttatttgactgtagGAGAATGGTGGAACAAAGACGTTGAGACTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCGATGTCGGATGCTCATACCATTAACGGAAAACC

Basic information

species Arabidopsis thaliana
transcript AT5G03260.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415489|gb|EG458081.1|EG458081
EST:     AAAACCGTATCCGTTCCCACAGCCATACCAAGAATCTAACATAATCCTCG                         GAGAATGGTGGAACAAAGACGTTGAGACTGCGGTTAACCAAGCCAACCAAT
genomic: AAAACCGTATCCGTTCCCACAGCCATACCAAGAATCTAACATAATCCTCGgttagtgaaa ... ttgactgtagGAGAATGGTGGAACAAAGACGTTGAGACTGCGGTTAACCAAGCCAACCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccatccttaaatttttctttttctcattgccttggttttttatttgactgtagGAGAATGGTGGAACAAAGACGTTGAGACTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCGATGTCGGATGCTCATACCATTAACGGAAAACC
                                           atttgac  putative branch site (score: 4)
             tttttctttttctcat  CT-rich tract
        ttaaatttttcttttt  TA-rich tract