Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcttgtttcatcagtagctgagttctctcatattgtcgatgcctaacgtctctttcgcatcttttatgtatcttacagAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATATCTATCTCCTGCACAGTTGTCTCTTTCACTAGCTTCACAACCATCATCTTTCCCTACGTCAC

Basic information

species Arabidopsis thaliana
transcript AT4G39140.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073214|gb|DR368971.1|DR368971
EST:     ATCTATCTTTTCCAAGAAATTCTTCCATGAATACAGTCTTCGAACAG                         AAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATATCTATCTCCTGCA
genomic: ATCTATCTTTTCCAAGAAATTCTTCCATGAATACAGTCTTCGAACAGgtaatgcttg ... tatcttacagAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATATCTATCTCCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctcatattgtcgatgcctaacgtctctttcgcatcttttatgtatcttacagAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATATCTATCTCCTGCACAGTTGTCTCTTTCACTAGCTTCACAACCATCATCTTTCCCTACGTCAC
                 gcctaac  putative branch site (score: 2)
                                      ttttatgtatctta  TA-rich tract