1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttttgcttgttaattttgtagctagaaagggattgttgtgcctgtgttctactgaagtgtctctcgtcaaataatttataagcactgtctttgcatagTGCTTAGTAGGTGCTAGTTATGGGGAATGCGTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTTGCAGAGGAGC
species | Arabidopsis thaliana |
transcript | AT4G39140.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTATCATCTTCCTCTTCTCCGGCGACGTTTTGGAAGTTCT-GG-G-A- -GC-----AGGTGCTAGTTATGGGGAATGCGTGTTGTGTTGCTGCTCGAGAEST: gi|125009187|gb|EL081456.1|EL081456
genomic: AACTATCATCTTCCTCTTCTCCGGCGACGTTTTGGAAGTTCTGGGAGCAGgttcgatgtt ... ctttgcatagTGCTTAGTAGGTGCTAGTTATGGGGAATGCGTGTTGTGTTGCTGCTCGAGA
EST: AACTATCATCTACCTCTTCTCCGGCGACGTTTTGGAAGTTCTGGGAGCAG TGCTTAGTAGGTGCT
genomic: AACTATCATCTTCCTCTTCTCCGGCGACGTTTTGGAAGTTCTGGGAGCAGgttcgatgtt ... ctttgcatagTGCTTAGTAGGTGCT
gtgttctactgaagtgtctctcgtcaaataatttataagcactgtctttgcatagTGCTTAGTAGGTGCTAGTTATGGGGAATGCGTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTTGCAGAGGAGC
ctgtcttt CT-rich tract
tcaaataatttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgcttgttaattttgtagctagaaagggattgttgtgcctgtgttctactgaagtgtctctcgtcaaataatttataagcactgtctttgcatagTGCTTAGTAGGTGCTAGTTATGGGGAATGCGTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTTGCAGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - -ctagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat