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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattactactttcatgtatatgagaaacaagaaatctgattagtcctttgatggcttatttgactggatcttacag

Basic information

species Arabidopsis thaliana
transcript AT4G37930.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042978|gb|DR338733.1|DR338733
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCT
EST: gi|86043013|gb|DR338768.1|DR338768
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGGATCTCCTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGG-ATCTCCTG
EST: gi|86042985|gb|DR338740.1|DR338740
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCT
EST: gi|125123137|gb|EL169586.1|EL169586
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCT
EST: gi|125077382|gb|EL140189.1|EL140189
EST:     CAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACA
genomic: CAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACA
EST: gi|86042990|gb|DR338745.1|DR338745
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCCACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|124930288|gb|EL007752.1|EL007752
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCT
EST: gi|86042975|gb|DR338730.1|DR338730
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCA-CTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|116444483|gb|EG487075.1|EG487075
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|86043018|gb|DR338773.1|DR338773
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAA
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAA
EST: gi|124932533|gb|EL009783.1|EL009783
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGT
EST: gi|124970333|gb|EL044170.1|EL044170
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTG
EST: gi|86042998|gb|DR338753.1|DR338753
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATG
EST: gi|86043015|gb|DR338770.1|DR338770
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTG
EST: gi|86042971|gb|DR338726.1|DR338726
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|86043012|gb|DR338767.1|DR338767
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTTGTCTGGATCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTT-GTCTGGATCT
EST: gi|125284878|gb|EL298963.1|EL298963
EST:     AGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: AGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|116433176|gb|EG475768.1|EG475768
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|125012420|gb|EL084689.1|EL084689
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCA
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCA
EST: gi|116432208|gb|EG474800.1|EG474800
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|86042987|gb|DR338742.1|DR338742
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACC
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACC
EST: gi|86043014|gb|DR338769.1|DR338769
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGT
EST: gi|86042976|gb|DR338731.1|DR338731
EST:     CAGAAGCGCGCTCTTGAAGCTTTCCGGNTAGATCCTGAAAAGTGGGGGAG                         TGAATGGTCAACCTTTGTCTGGATCTCCTGGCAACTTCC
genomic: CAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGG-AGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCC
EST: gi|124914630|gb|EH988504.1|EH988504
EST:     CTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|125020711|gb|EL092980.1|EL092980
EST:     CGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|124974933|gb|EL048462.1|EL048462
EST:     CGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|86042988|gb|DR338743.1|DR338743
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCT
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCT
EST: gi|116428932|gb|EG471524.1|EG471524
EST:     TCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|86042972|gb|DR338727.1|DR338727
EST:     CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
genomic: CCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTTCCATGTGTACACTG
EST: gi|124937756|gb|EL014465.1|EL014465
EST:     CCTGAAAAGTGGGGAG                         TGAATGTTCAACCTTTGTTCTGGATCTCCTGCCAACTTCCATGTGTACACT
genomic: CCTGAAAAGTGGGGAGgtaaattact ... gatcttacagTGAATGTTCAACCTTTG-TCTGGATCTCCTGCCAACTTCCATGTGTACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCGGTTAGATCCTGAAAAGTGGGGAGgtaaattactactttcatgtatatgagaaacaagaaatctgattagtcctttgatggcttatttgactggatcttacag

- - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC