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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaagcgcctttttgtatctcttgtttgtttatagttttccttgtggttgaagcaatggttttgattgttgaagttctatgtctgtttcaaattgatgtatggagttctatttttggtgtgactgaatctaatgaaacttatgtctttgtaaacgttcgtttcag

Basic information

species Arabidopsis thaliana
transcript AT4G37930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042978|gb|DR338733.1|DR338733
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043013|gb|DR338768.1|DR338768
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042992|gb|DR338747.1|DR338747
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043016|gb|DR338771.1|DR338771
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|164025583|gb|ES120071.1|ES120071
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTT
EST: gi|86042985|gb|DR338740.1|DR338740
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043011|gb|DR338766.1|DR338766
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042990|gb|DR338745.1|DR338745
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|125076602|gb|EL139695.1|EL139695
EST:     TGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTG
genomic: TGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTG
EST: gi|86043019|gb|DR338774.1|DR338774
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|164151265|gb|EL994053.1|EL994053
EST:     GATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: GATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042975|gb|DR338730.1|DR338730
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042977|gb|DR338732.1|DR338732
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042979|gb|DR338734.1|DR338734
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043008|gb|DR338763.1|DR338763
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|125042169|gb|EL114438.1|EL114438
EST:     TGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGAC
genomic: TGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTG-C
EST: gi|86043001|gb|DR338756.1|DR338756
EST:     CTTCTTTGCCCAGNGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043018|gb|DR338773.1|DR338773
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042997|gb|DR338752.1|DR338752
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043004|gb|DR338759.1|DR338759
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGC-AAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043017|gb|DR338772.1|DR338772
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042998|gb|DR338753.1|DR338753
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042986|gb|DR338741.1|DR338741
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCAMCTTTAGAGGAGGTTTGATCCTGAGATTGC
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTT-GATCCTGAGATTGC
EST: gi|86042999|gb|DR338754.1|DR338754
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATTAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043015|gb|DR338770.1|DR338770
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042996|gb|DR338751.1|DR338751
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043012|gb|DR338767.1|DR338767
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|116433176|gb|EG475768.1|EG475768
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|116432208|gb|EG474800.1|EG474800
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042967|gb|DR338722.1|DR338722
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|124902402|gb|EH976482.1|EH976482
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGC
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGC
EST: gi|125115495|gb|EL165439.1|EL165439
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGCGTCACT                         TGGCCAAAACAGCTTAACGCNCCTTTAGAGGAGGTTGATCCTGAGATTGC
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGC
EST: gi|86042974|gb|DR338729.1|DR338729
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042987|gb|DR338742.1|DR338742
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|152038565|gb|AV830516.2|AV830516
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042994|gb|DR338749.1|DR338749
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042966|gb|DR338721.1|DR338721
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042982|gb|DR338737.1|DR338737
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|124764702|gb|EH854832.1|EH854832
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGCGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGC
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGC
EST: gi|86043006|gb|DR338761.1|DR338761
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|125167173|gb|EL192612.1|EL192612
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATT
EST: gi|86042968|gb|DR338723.1|DR338723
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043014|gb|DR338769.1|DR338769
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042976|gb|DR338731.1|DR338731
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042983|gb|DR338738.1|DR338738
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTYACT                         TGGCCAAAACAGCTTAACGCACCTTTTAGAGGAGGTTGATCCTGAGAT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTT-AGAGGAGGTTGATCCTGAGAT
EST: gi|124765960|gb|EH856090.1|EH856090
EST:     TTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: TTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042969|gb|DR338724.1|DR338724
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042970|gb|DR338725.1|DR338725
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042984|gb|DR338739.1|DR338739
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042993|gb|DR338748.1|DR338748
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042995|gb|DR338750.1|DR338750
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042988|gb|DR338743.1|DR338743
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|124728112|gb|EH819514.1|EH819514
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCA
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCA
EST: gi|86043000|gb|DR338755.1|DR338755
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043009|gb|DR338764.1|DR338764
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043010|gb|DR338765.1|DR338765
EST:     CTTCTTTGCCCAGTGAAGCCGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|116428932|gb|EG471524.1|EG471524
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86043005|gb|DR338760.1|DR338760
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
EST: gi|86042972|gb|DR338727.1|DR338727
EST:     CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACT                         TGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT
genomic: CTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaa ... ttcgtttcagTGGCCAAAACAGCTTAACGCACCTTTAGAGGAGGTTGATCCTGAGATTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCTTTGCCCAGTGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTgtgagtttaagcgcctttttgtatctcttgtttgtttatagttttccttgtggttgaagcaatggttttgattgttgaagttctatgtctgtttcaaattgatgtatggagttctatttttggtgtgactgaatctaatgaaacttatgtctttgtaaacgttcgtttcag

- - - - - - - TGAAGC
- - - - - - - - AAGCTG
- - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - AAGGAA