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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACATCCAGACAATCAGATCTGCTCAGCATTTCATATATATCGAGAATCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttgatctttgagtacagttcttagactaggaaataaaatactcacattgcagacagcatgaagtctagaattgttctcagttactagttttgt...

Basic information

species Arabidopsis thaliana
transcript AT4G35790.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054673|gb|DR350430.1|DR350430
EST:     TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAG                         GAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGTAAAA
genomic: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGCAAAA
EST: gi|125276489|gb|EL290574.1|EL290574
EST:     CTTATGCTTGGCCTTCTTATAGAGACGCAG                         GAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTT
genomic: CTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTT
EST: gi|124883228|gb|EH962130.1|EH962130
EST:     TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAG                         GAGCTGACAATCTTATTCCTATGGA
genomic: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGA