1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctctattttcacctcacagttacctgaactgtattaaataaagcttagtaactttttcacccgcggattttctgattctgtgttcgtcttgtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGCAAAATCAGAGCTAAGGAAAGATTTGCCGTATATGTTGTCATACCATTGTGGCC
species | Arabidopsis thaliana |
transcript | AT4G35790.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAG GAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGTAAAAEST: gi|125276489|gb|EL290574.1|EL290574
genomic: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGCAAAA
EST: CTTATGCTTGGCCTTCTTATAGAGACGCAG GAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTEST: gi|124883228|gb|EH962130.1|EH962130
genomic: CTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTT
EST: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAG GAGCTGACAATCTTATTCCTATGGA
genomic: TCAGTATTTCCTGGGTTCTTCTTATGCTTGGCCTTCTTATAGAGACGCAGgtgcattttg ... gtatgagcagGAGCTGACAATCTTATTCCTATGGA
tagtaactttttcacccgcggattttctgattctgtgttcgtcttgtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGCAAAATCAGAGCTAAGGAAAGATTTGCCGTATATGTTGTCATACCATTGTGGCC
acttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctattttcacctcacagttacctgaactgtattaaataaagcttagtaactttttcacccgcggattttctgattctgtgttcgtcttgtatgagcagGAGCTGACAATCTTATTCCTATGGAGTTGGCACTAAAGATTGTTAGCAAAATCAGAGCTAAGGAAAGATTTGCCGTATATGTTGTCATACCATTGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA