1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agagaacttgtgtttctactcccagattcttgaaccattatatatattgagtcttcgtaagacataaagagcttgatgatatctctatctatctacacagGTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGAGATGAGTTTGTGGAGCCATCAGATCTGGAATGTCTGAAGAAGGTGAACA
species | Arabidopsis thaliana |
transcript | AT4G35790.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCAACCTAATCATACATGGGCTCACAAGGGAAGACACCCACGTGGCCAG GTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGAEST: gi|124942508|gb|EL018768.1|EL018768
genomic: ACCAACCTAATCATACATGGGCTCACAAGGGAAGACACCCACGTGGCCAGgtttgccttc ... atctacacagGTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGA
EST: AAGGGAAGACACCCACGTGGCCAG GTGTATGGATACAGAATGTCACTATGGGCAGAACATTTAGGCAAAACTGGA
genomic: AAGGGAAGACACCCACGTGGCCAGgtttgccttc ... atctacacagGTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGA
attgagtcttcgtaagacataaagagcttgatgatatctctatctatctacacagGTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGAGATGAGTTTGTGGAGCCATCAGATCTGGAATGTCTGAAGAAGGTGAACA
gcttgat putative branch site (score: 5)
tctatct putative PPT
acataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagaacttgtgtttctactcccagattcttgaaccattatatatattgagtcttcgtaagacataaagagcttgatgatatctctatctatctacacagGTGTATGGATACAGAATGTCACTATGGGCAGAGCATTTAGGCAAAACTGGAGATGAGTTTGTGGAGCCATCAGATCTGGAATGTCTGAAGAAGGTGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG