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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttcttatgtggtcaatgtttcaaaattgtcttaatttcagactttcttgattggttacctatcaatactttgaacagaatattttttcgggttaactgagaatggatgctagtttttttgtagcttcattgccaatgatcctgtttgtctcattgtttaacagGTTGGAATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTTGAACTTACACAGGATTATCGTATAGTGTTACCTC

Basic information

species Arabidopsis thaliana
transcript AT4G35440.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35440.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g04260.t01 (Vitis vinifera), 3'ss of exon 4
gtactgttcttatgtggtcaatgtttcaaaattgtcttaatttcagactttcttgattggttacctatcaatactttgaacagaatattttttcgggttaactgagaatggatgctagtttttttgtagcttcattgccaatgatcctgtttgtctcattgtttaacagGTTGGAATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTTGAACTTACACAGGATTATCGTATAGTGTTACCTC
                                                    |  ||| |||   | ||  | | || ||    |   ||| |    ||   | |  ||| | |       |  ||| |||| |||    | || | |               |  |||||||| ||||||||||| ||||| || || |||||||| ||||| ||||||||  | || || |||||||| || ||||| ||| | |||||  |||| |
---------------------------------------------------atcaatttgtt---tttctcttcattcaatgctaatatttgtgatcttgtttcaatatgcaag---accatgatgtggctt-attattgaggagctt-----------caacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125152277|gb|EL183998.1|EL183998
EST:     ATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTG                         GTTGGAATGGCTGCTACACTTG
genomic: ATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTGgtactgttct ... tgtttaacagGTTGGAATGGCTGCTACACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtttttttgtagcttcattgccaatgatcctgtttgtctcattgtttaacagGTTGGAATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTTGAACTTACACAGGATTATCGTATAGTGTTACCTC
                                       tctcatt  CT-rich tract
     ttttttgta  TA-rich tract