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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCTTAGTGCTGTTACTGCTTCTGTGGTTTCCGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGCTCTCCTGGAGgtaatatgcattgccattcttatgctttttacgcaagggaaccagaaaccaaacttatgagagctggtcactgattttcag

Basic information

species Arabidopsis thaliana
transcript AT4G35440.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35440.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G00270.1 (Glycine max), 5'ss of exon 3
GTTATTCTTAGTGCTGTTACTGCTTCTGTGGTTTCCGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGCTCTCCTGGAGgtaatatgcattgccattcttatgctttttacgcaagggaaccagaaaccaaacttatgagagctggtcactgattttcag-------------------
|| || ||||||||||| |  || ||||| ||||| || || || || |||||| ||||||| ||||| |||||||| ||||||||||| || || || |||||          |||| || |      |     | |    ||  |    |   | |      || ||| || ||| |                     
GTGATACTTAGTGCTGTCATAGCATCTGTAGTTTCTGAGATTGGCCTTGGCTCTCAACCTGCCTTTAAAGTTCCTGAGTATGACTTCCGGTCCCCCGGTGgtaagtcatcaacacatttttctttgagattatttatgatttcaccacttcattctcttgctcttgttcattgctttgctcctttcttccctgtcaaatt