1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgcaattcattttacagttcaggtgataattaatcatgaaatttctgtttggcttctgttatatagttggtgttttggctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGGTTTCTGCTGAG
species | Arabidopsis thaliana |
transcript | AT4G34200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAG GAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAEST: gi|116478276|gb|EG520868.1|EG520868
genomic: AGAGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGgtgtgcaatt ... gctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGA
EST: AGAGGGTCACTGTGACACCTCGTCTTGGAGCTAGTACCATGGAGGCTCAG GAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAEST: gi|86054873|gb|DR350630.1|DR350630
genomic: AGAGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGgtgtgcaatt ... gctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGA
EST: AGAGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAG GAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGA
genomic: AGAGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGgtgtgcaatt ... gctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGA
atcatgaaatttctgtttggcttctgttatatagttggtgttttggctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGGTTTCTGCTGAG
aattaat putative branch site (score: 3)
ttatatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcaattcattttacagttcaggtgataattaatcatgaaatttctgtttggcttctgttatatagttggtgttttggctttgacagGAAGGAGTTGCCATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGGTTTCTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG