1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttacatttgctgattcttttgaaattgagttttgatcattcttgtctgttatctagctgacttgtggatcttggttttaataataccattgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCTTGCAGTGTTGGGATTCGGGAAAGTTGGGACGGAAGTTGCTCGTCGTGC
species | Arabidopsis thaliana |
transcript | AT4G34200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCEST: gi|116438319|gb|EG480911.1|EG480911
genomic: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
EST: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCEST: gi|116438320|gb|EG480912.1|EG480912
genomic: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
EST: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCEST: gi|164164453|gb|ES163367.1|ES163367
genomic: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
EST: GGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCEST: gi|86054853|gb|DR350610.1|DR350610
genomic: GGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
EST: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAEST: gi|116478265|gb|EG520857.1|EG520857
genomic: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGA
EST: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTG GAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
genomic: GGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGgttagttcct ... tgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCC
tctgttatctagctgacttgtggatcttggttttaataataccattgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCTTGCAGTGTTGGGATTCGGGAAAGTTGGGACGGAAGTTGCTCGTCGTGC
ttttaat putative branch site (score: 3)
ttttaataataccatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacatttgctgattcttttgaaattgagttttgatcattcttgtctgttatctagctgacttgtggatcttggttttaataataccattgtaatgcagGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAAAGACCCTTGCAGTGTTGGGATTCGGGAAAGTTGGGACGGAAGTTGCTCGTCGTGC
- - - - - ctgattc
- - - - - - - - - - - - - - -gttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacca