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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGATGGCACAGTATTGCAGAATTCGTCTCCAATGTTTCATCATTTTTGTTTTCCCTTGCATATTACGCAAGGCTGTGATGTCCTAAAACTTGCAGAGgtacgatgtcgttacttaagcaagaaatctttattttcaagtaacagacactcttgaatggttcatctacaccagaatatgtgcaacataagtggtcttgctttacacaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G33500.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087663|gb|DR383422.1|DR383422
EST:     GTTTTCCCTTGCATATTACGCAAGGCTGTGATGTCCTAAAACTTGCAGAG                         GTTTACCATGTGAACCTGGAAGAAGGCGATGTTGTCATCGCAGCAACTGAT
genomic: GTTTTCCCTTGCATATTACGCAAGGCTGTGATGTCCTAAAACTTGCAGAGgtacgatgtc ... caatttgcagGTTTACCATGTGAACCTGGAAGAAGGCGATGTTGTCATCGCAGCAACTGAT
EST: gi|125094616|gb|EL152048.1|EL152048
EST:     GTTTTCCCTTGCATATTACGCAAGGCTGTGATGTCCTAAAACTTGCAGAG                         GTTTACCATGTGAACCTGGAAGAAGGCGATGTTGTCA
genomic: GTTTTCCCTTGCATATTACGCAAGGCTGTGATGTCCTAAAACTTGCAGAGgtacgatgtc ... caatttgcagGTTTACCATGTGAACCTGGAAGAAGGCGATGTTGTCA