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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacttggtccctaacatatatattgcattggaaatccttttgagatagagtcagtctgtgatcatgtaaaattactttgtagGAACTCCACATAGCCAATATTGGAGATTCGGGATTCATGGTCATTAGGGATGGCACAGTATTGCAGAATTCGTCTCCAATGTTTCATCATTTTTGTTTTC

Basic information

species Arabidopsis thaliana
transcript AT4G33500.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125255789|gb|EL269874.1|EL269874
EST:     CAACAGCCTTAATTGCTCATCTTGACAATAAT                         GAACTCCACATAGCCAATATTGGAGATTCGGGATTCATGGTCATTAGGGAT
genomic: CAACAGCCTTAATTGCTCATCTTGACAATAATgtgagacttg ... tactttgtagGAACTCCACATAGCCAATATTGGAGATTCGGGATTCATGGTCATTAGGGAT
EST: gi|124716991|gb|EH808393.1|EH808393
EST:     CTAAGTCCTCTGGATCATCAACAGCCTTAATTGCTCATCTTGACAATAAT                         GAACTCCACATAGCCAATA
genomic: CTAAGTCCTCTGGATCATCAACAGCCTTAATTGCTCATCTTGACAATAATgtgagacttg ... tactttgtagGAACTCCACATAGCCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaaatccttttgagatagagtcagtctgtgatcatgtaaaattactttgtagGAACTCCACATAGCCAATATTGGAGATTCGGGATTCATGGTCATTAGGGATGGCACAGTATTGCAGAATTCGTCTCCAATGTTTCATCATTTTTGTTTTC
                                            ttacttt  CT-rich tract
                                    atgtaaaattacttt  TA-rich tract