Sequence
atgc intronic sequence ATGC exonic sequencegtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32660.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 3'ss of exon 6
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
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------------gtaat--gtcaa--tcagttttgtagtgatcatctgctatt------ctgaaactaggcatgcggtatt--agcagttatgttgaatgatcccttgg-----ggttgta-----cagAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATA
upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA06G08480.2 (Glycine max), 3'ss of exon 6
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagtttt--gaaagaaaaagaaaaatcttca-agagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
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-----------------------------------------------gtatttattatttttggatccaaacataataatgtttgtagactcagttataatatatttaagggtaattattggattggtacagAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATA
upper sequence: AT4G32660.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 7
gtatctagaactgaaataggttaaggttgggtttgggtacactctctgtagttaaagttttgaaagaaaaagaaaaatcttcaagagtttgtactttt-tgacagtttggtatttgattttaaata-acagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
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----------------------------gtatttgg-----ccttttacaattggaaaatcattccattttgga-----tttgggtatagatgcatttataatatttaaataaatgcttggaatggtacagAGGTTTTCTTCCGATGAAACTCACTTCAGGTGCTTGCCAAAGTCGAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124992155|gb|EL064424.1|EL064424EST: GTCTTCTGAAAATGTAAAGCTTCCTGACAATAAG AGGAGTGCTGCAAATGAGACACATTTCAGGTG
genomic: GTCTTCTGAAAATGTAAAGCTTCCTGACAATAAGgtatctagaa ... taaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatcttcaagagtttgtactttttgacagtttggtatttgattttaaataacagAGGAGTGCTGCAAATGAGACACATTTCAGGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATAACCGGATTCATC
tttggtatttgatttt TA-rich tract