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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTGATAAAGGCCGCACACGgtatttatttatcttctagactttagttgatgacatcgtttccttcagaggtgtatatcattgctcagtttcttcatttctgctttgtccttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G32660.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32660.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 4
CAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTGATAAAGGCCGCACACGgtatttatttatcttctagacttta-gttgatgacatcgtttccttcag--aggtgtatatcattgctcagtttcttcatttctgctttgtccttgcag
|||| ||| || |||||||||| |  || ||||| |||||||||||| ||||||||| ||| |||||  |||||||||||| ||||||| || |    |||||  |||  |    ||||| |||  | |||    |  |||  |   ||   | | |||  | |     | | | |     | | |||  |   | |||
CAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtacatatcca----ctagattttctgctgaatggaaggttgacgctagttggctttatgccctgctctaatgtttatgaattttcttgctttctacag

upper sequence: AT4G32660.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 5'ss of exon 6
CAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTGATAAAGGCCGCACACGgt---atttatttatcttctagactttagttgatgacatcgttt-ccttcagaggtgtatatcattgctcagtttcttcatttctgctttgtccttgcag--
| || ||| | ||||| |   |  |||| ||||||||||| || ||||||||||||||||| || |  |  ||||  || | ||| ||     ||| |||||   |||| |   | |  || |||||   || | |    || |  ||||       | | ||  | |||   ||||   |  | |  ||   || |||   
CTATCAAGGTCATTCGCAATGTGCAGAAGTACCGGGATGCTGCTATGATTGAAATTGATGTGCTGCGTACGCTTGCCAAAAATGACAAGATGGGCATACGgtctgatttttgcgtgtcttatactttttgtggttattatgtatatcttcttcttcttgtttctcttctc--cttctcgttggcagagtttaactggcaagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163990545|gb|ES114651.1|ES114651
EST:     GAGTGATGAAGGCCGCACACG                         CTGTGTACAGATGAAGAACTGGTTTGATTACCGAAATCATATTTGCATT
genomic: GAGTGATAAAGGCCGCACACGgtatttattt ... gtccttgcagCTGTGTACAGATGAAGAACTGGTTTGATTACCGAAATCATATTTGCATT