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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgttttatcaaatcgttcatgtggttctcttttcttaatatattgttacaacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC

Basic information

species Arabidopsis thaliana
transcript AT4G31780.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31780.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g06920.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttgttttatcaaatcgttcatgtggttctcttttcttaatat-attgtta--caacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC
||  |||  |      |||  ||| | || | || | || | | | |  || | |  | |||| | | |  | |||||||||||||| |||||||| |||||||| ||||||||| |||| || || |||||||||||    ||||| || ||  |  | ||||| || || |||||||||
gtaggtt-ctacccataatgtttcctttgatactatattttcagtgttgttataatcctacatttctctactcatgtttagGTTTCACAAGCTTGTAACAAGATGCTATTGCCCAACAACTGATGTTGCAAAAAGGGCATTGAAAGCTGGGCTCCAGTCTTCACAGATTAAGGTTTATGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125105144|gb|EL158998.1|EL158998
EST:     CATCCTACATG                         GTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAA
genomic: CATCCTACATGgtttgttgtt ... tgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtggttctcttttcttaatatattgttacaacatgtttgttttgatgtttagGTTTCATAAGCTTGTGACAAGATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATCACAAATCAAAGTTTATGGC
                                      tttgtttt  CT-rich tract
            ttttcttaatatattg  TA-rich tract