Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttgatatttccatccatctttttgggtagaatcacgattgattgatcattgatggatttcagtttgggacttttacaagttttggtagtaaat...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G31780.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G31780.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA17G33780.1 (Glycine max), 5'ss of exon 1
GAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttgatatttcc----atccat-ctttttgggta-gaatcacgattgattgatcattgatggatttcagtttgggacttttacaagttttggtagtaaat-
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AAAAGTTTTGATTTTGATGAGTGACACTGGTGGGGGGCATAGAGCTTCTGCTGAAGCTATCAAAGCTGCTTTCTATCAAGAATTTGGAGATGATTATCAGgtttgctttgtttctttttttaatccatattttttgtgcaaggggaacactttttttttaatcggcacatgttaatttttagtttt-----gttt--gtagacaatc
upper sequence: AT4G31780.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA14G12120.1 (Glycine max), 5'ss of exon 1
GAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttgatatttccatccatctttttgggtagaatcacgattgattgatcattgatggatttcagtttgggacttttacaagttttggtagtaaat
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AAAAGTTTTGATTTTGATGAGTGACACTGGTGGGGGGCATCGAGCTTCCGCTGAAGCTATCAAAGCTGCTTTCTATCAAGAATTTGGAGATGATTATCAGgtttgctttgcttcttttttttaacccttttttgtgtaaggggaataatagaagattttttttacatatattaaaaaagtaggggaaattagtgatgatt
upper sequence: AT4G31780.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0008g06920.t01 (Vitis vinifera), 5'ss of exon 1
GAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttgatatttccatccatctttttgggtagaatcacga-----ttgattgatcattgatggatttcagtttgggacttttacaagttttggtagtaaat
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AAAAGTTCTTATTTTGATGAGTGATACTGGTGGTGGTCACCGAGCTTCTGCGGAAGCTATTAAGGCGGCATTCAATGAAGAATTCGGGGAGGAGTATCAGgtcagttttgatggattgaagcacggctagatttcaaatcacttagcctctgtttggttgccgagaaaatcta---tgaaaataaaataaattaaaagaattt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059933|gb|DR355690.1|DR355690EST: CGGAAGCCATTAGAGCGGCTTTTAATCAGGAGTTTGGAGATGAGTACCAG GTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAG
genomic: CGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttg ... gcttgcgcagGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGGTCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTACCAGgttcgtcttgatatttccatccatctttttgggtagaatcacgattgattgatcattgatggatttcagtttgggacttttacaagttttggtagtaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG