1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgtaaattcttctttcatcctgtagaaacgaaaaactcttcttactaattaatacttctttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAAAAGTGTATTTGGTGAGGATGCTCTTGTGAATGTGAGTATTGAGAAGCAA
species | Arabidopsis thaliana |
transcript | AT4G31480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: -TCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGAATEST: gi|86058808|gb|DR354565.1|DR354565
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAAT
EST: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAAEST: gi|86086628|gb|DR382387.1|DR382387
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
EST: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAAEST: gi|125039052|gb|EL111321.1|EL111321
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
EST: CAAATCTACGAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGAATGTGGATTEST: gi|164118708|gb|ES014772.1|ES014772
genomic: CAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATT
EST: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGAATGTEST: gi|125198790|gb|EL213744.1|EL213744
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGT
EST: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC ATCCGCAATAGAAGGCGGATGTGGA
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGA
tcatcctgtagaaacgaaaaactcttcttactaattaatacttctttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAAAAGTGTATTTGGTGAGGATGCTCTTGTGAATGTGAGTATTGAGAAGCAA
cttctttactt CT-rich tract
ttactaattaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtaaattcttctttcatcctgtagaaacgaaaaactcttcttactaattaatacttctttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAAAAGTGTATTTGGTGAGGATGCTCTTGTGAATGTGAGTATTGAGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA