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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttattgaaaccttttatagttgtaccttcttttcgtatgtttgttggagtttggtataaccaattcctgttgtattctttatgtcagGTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC

Basic information

species Arabidopsis thaliana
transcript AT4G31480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164156257|gb|ES117103.1|ES117103
EST:     CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAG                         GTTGCTGTGAACACCACAATAC
genomic: CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAGgtaatttatt ... tttatgtcagGTTGCTGTGAACACCACAATAC
EST: gi|86058808|gb|DR354565.1|DR354565
EST:     CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAG                         GTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATT
genomic: CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAGgtaatttatt ... tttatgtcagGTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATT
EST: gi|86086628|gb|DR382387.1|DR382387
EST:     CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAG                         GTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATT
genomic: CAGAGGTTGCTTTCAGAACTATGTGGGCAGAGTTCGAATGGGAAAACAAGgtaatttatt ... tttatgtcagGTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtatgtttgttggagtttggtataaccaattcctgttgtattctttatgtcagGTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC
                     gtataac  putative branch site (score: 3)
                                        tattcttt  putative PPT
                                        tattctttat  TA-rich tract