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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTGCATGATGTACTCTACATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGgtatgatacccatctcaattttctttattgccatattttaaggcaaacaacagatttgctctgtaggaatgatgcaaccatttacttttgcttgtttttattttag

Basic information

species Arabidopsis thaliana
transcript AT4G30500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G07780.1 (Glycine max), 5'ss of exon 3
ATATTTGCATGATGTACTCTACATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGgtatgatacccatctcaattttctttattgccatattttaaggcaaacaacagatttgctctgtaggaatgatgcaaccatttacttttgcttgtttttattttag
|||||| ||||||||  ||||||| || ||||||||||| |||   || ||| ||||||||||||| |||||| | ||| | |||||| |   |  |  |   |    | | | |   | |||       || |   | ||||     |   |||| |       |  |||   |||  ||   ||  |  
ATATTTACATGATGTTATCTACATAACATGCTTTGTGCAAGTCATGTCCATCGTCTCTGGAAAGTTCTGGTACACATATCTTGTGgtaaggcccataatttgttcacatatgtggttttcttt----atgaatatgggttttgtaac-tgttaatgttattgttttgcactgaagctacttcaaataatg-

upper sequence: AT4G30500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0069g01100.t01 (Vitis vinifera), 5'ss of exon 3
ATATTTGCATGATGTACTCTACATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGgtatgatacccatctcaattttctttattgccatattttaaggcaaacaacagatttgctctgtaggaatgatgcaaccatttacttttgcttgtttttattttag-
 ||||| ||||||||| ||||||| ||  ||||||||||  ||   || |||||||||| ||||||||||||| ||||| | |||||| ||| |    || | |||| |||     |||    | |  |||   |||   | || |  | | | | |||||    |  | |   | |    |  | |  || 
TTATTTACATGATGTAATCTACATTACAAGCTTTGTGCAAATCATGTCCATCATCTCTGAAAAGTTTTGGTACACGTATCTGGTGgtaagatccattcctgatttttgtttggaaacatgcactca--caatgcacatgatggcacctt-gtagtcatgca--tgtggattgaaggtcaagt--aatggaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187058|gb|ES035694.1|ES035694
EST:     TGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTG                         ATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGA
genomic: TGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGgtatgatacc ... tttattttagATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGA
EST: gi|86085401|gb|DR381160.1|DR381160
EST:     TGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTG                         ATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGACTATTG
genomic: TGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTTAGTGgtatgatacc ... tttattttagATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGACTATTG