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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcctcgttcctcatttcttaaattctcaatacattaatccgttgagcttagatttgtttagatacgttacttgtatcaatatggaactaaaaatccgttgaatttgatctttaggtctcgaaagtttcaatgtttagctgattttgtttcgatgaattcgaggattgatgtttttggcaatatgtgtttgcagATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGGAAAAATTGGATTGGTCTTGTGTTAACATCGTTAGGTTACGGGATTCCAT

Basic information

species Arabidopsis thaliana
transcript AT4G30500.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447963|gb|EG490555.1|EG490555
EST:     AGAACGCTCGACACATGGCTAAGCTCCGTCTCATTATGATCCTTTGCAAC                         ATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGG
genomic: AGAACGCTCGACACATGGCTAAGCTCCGTCTCATTATGATCCTTTGCAACgtaacttcct ... gtgtttgcagATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGG
EST: gi|86085401|gb|DR381160.1|DR381160
EST:     ACGCTCGACACATGGCTAAGCTCCGTCTCATTATGATCC-TTGCAAC                         ATTTTGTATGYCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGG
genomic: ACGCTCGACACATGGCTAAGCTCCGTCTCATTATGATCCTTTGCAACgtaacttcct ... gtgtttgcagATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattttgtttcgatgaattcgaggattgatgtttttggcaatatgtgtttgcagATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCATTCAAGTCATACCTGGAAAAATTGGATTGGTCTTGTGTTAACATCGTTAGGTTACGGGATTCCAT
                        gattgat  putative branch site (score: 4)
                             atgttttt  TA-rich tract