Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgtcgaaactccttcctttgtaccatacataatatttatgtttgaggatataaactcatgaaccaagaatcttttattctctccagTTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACAAAGCAACCAATGAGGCTATATGCGAGTCTA
Basic information
species | Arabidopsis thaliana |
transcript | AT4G30290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116443909|gb|EG486501.1|EG486501EST: ACCGCTAACTTTCACACTTATTGCATCACATGGAATCCACAAAGAATTAT TTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACG
genomic: ACCGCTAACTTTCACACTTATTGCATCACATGGAATCCACAAAGAATTATgtaagtgtcg ... ttctctccagTTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACG
EST:
gi|116443910|gb|EG486502.1|EG486502EST: ACCGCTAACTTTCACACTTATTGCATCACATGGAATCCACAAAGAATTAT TTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACG
genomic: ACCGCTAACTTTCACACTTATTGCATCACATGGAATCCACAAAGAATTATgtaagtgtcg ... ttctctccagTTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatttatgtttgaggatataaactcatgaaccaagaatcttttattctctccagTTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACAAAGCAACCAATGAGGCTATATGCGAGTCTA
tcttttattctctcc CT-rich tract
aagaatcttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgtcgaaactccttcctttgtaccatacataatatttatgtttgaggatataaactcatgaaccaagaatcttttattctctccagTTTTACCGTTGATGGGATTCCAATTAGAGAGTTTATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACAAAGCAACCAATGAGGCTATATGCGAGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA