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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacatgtaacgttcttgtcatgttttgctatttcataaaatgttcgtaccacttgcttatatgatgttctaatttgtgtagCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGGAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G30290.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443909|gb|EG486501.1|EG486501
EST:     AACCGTCACAACATTCTAT                         CTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGG
genomic: AACCGTCACAACATTCTATgtaagtaaca ... atttgtgtagCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGG
EST: gi|116443910|gb|EG486502.1|EG486502
EST:     AAATGAAACTTGTCCCTGGTAACTCTGCTGGAACCGTCACAACATTCTAT                         CTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGG
genomic: AAATGAAACTTGTCCCTGGTAACTCTGCTGGAACCGTCACAACATTCTATgtaagtaaca ... atttgtgtagCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatttcataaaatgttcgtaccacttgcttatatgatgttctaatttgtgtagCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAGTTTTTGGGGAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAAAG
                                        ttctaat  putative branch site (score: 2)
     ttcataaaat  TA-rich tract