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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattatcaaatcttgaatcttaaatttactttctttgcatcattataagaaactgtgatttggttttaactgttattaactctcgttttaacacgttcaatctaaatccttttgaaataatcagatgcgttgacttataacatttttatctttctttttgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACGTGTTATCTTCAAGATCGACTCTAAGTATACTGAGTACTCACCTCAGTA

Basic information

species Arabidopsis thaliana
transcript AT4G29770.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057008|gb|DR352765.1|DR352765
EST:     CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG                         ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: gi|86057009|gb|DR352766.1|DR352766
EST:     CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG                         ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTBTGCAC
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: gi|86057006|gb|DR352763.1|DR352763
EST:     CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG                         G
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcag-
EST: gi|86057006|gb|DR352763.1|DR352763
EST:     CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG                         G
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcag-
EST: gi|86057007|gb|DR352764.1|DR352764
EST:     AATGTCATCCCGATTAGCTTANAAGCAAA-AATGAGCAAGAAGATATACG                         ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCA
genomic: AATGTCATCCCGATT-GCTTAAAAGCAAACAATGAGCAAGAAGAT-TACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaataatcagatgcgttgacttataacatttttatctttctttttgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACGTGTTATCTTCAAGATCGACTCTAAGTATACTGAGTACTCACCTCAGTA
                     ttataac  putative branch site (score: 2)
                           catttttatctttctt  CT-rich tract
                   acttataacattttta  TA-rich tract