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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGAGAGTTAAGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGgtaactttctcttcattttttctttctctgttggattattttacttttttttttggctttgttacggaacctgctcatgatttgacctagtgaactctta...

Basic information

species Arabidopsis thaliana
transcript AT4G29770.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057008|gb|DR352765.1|DR352765
EST:     AGGCGACATTTCACTGATTTTTCTCTACGCGACGTAGATCTGTGTCTCCG                         GAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
genomic: AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGgtaactttct ... ttaaaaccagGAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
EST: gi|86057009|gb|DR352766.1|DR352766
EST:     AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCG                         GAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
genomic: AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGgtaactttct ... ttaaaaccagGAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
EST: gi|86057006|gb|DR352763.1|DR352763
EST:     AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCG                         GAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
genomic: AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGgtaactttct ... ttaaaaccagGAGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGG
EST: gi|86057007|gb|DR352764.1|DR352764
EST:     AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCG                         GAGTTCATCGCAGATGGANAGTCATTGTTAGAATGTTTTGCAATCACGGAT
genomic: AGGCGACATTTCACTGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGgtaactttct ... ttaaaaccagGAGTTCATCGCAGATGG--AGTCATTGTTAGAATGTTTTGCAATCACGGAT