1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGGCAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatcaaatcttgaatcttaaatttactttctttgcatcattataagaaactgtgatttggttttaactgttattaactctcgttttaacacgttcaatctaaatccttttgaaataatcagatgcgttgacttataacatttttatctttctttttgtcttgcag
species | Arabidopsis thaliana |
transcript | AT4G29770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACEST: gi|86057010|gb|DR352767.1|DR352767
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACEST: gi|86057009|gb|DR352766.1|DR352766
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTBTGCACEST: gi|86057005|gb|DR352762.1|DR352762
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACEST: gi|86057006|gb|DR352763.1|DR352763
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCAC
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG GEST: gi|86057006|gb|DR352763.1|DR352763
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcag-
EST: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACG GEST: gi|86057007|gb|DR352764.1|DR352764
genomic: CAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatc ... tgtcttgcag-
EST: AATGTCATCCCGATTAGCTTANAAGCAAA-AATGAGCAAGAAGATATACG ATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCA
genomic: AATGTCATCCCGATT-GCTTAAAAGCAAACAATGAGCAAGAAGAT-TACGgtatattatc ... tgtcttgcagATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCATCGCAGATGGAGTCATTGTTAGAATGTTTTGCAATCACGGATGGCAAATGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGgtatattatcaaatcttgaatcttaaatttactttctttgcatcattataagaaactgtgatttggttttaactgttattaactctcgttttaacacgttcaatctaaatccttttgaaataatcagatgcgttgacttataacatttttatctttctttttgtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG