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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTTTGTGGAATGCAGAAGTTTTTGGCAATATTACGAATCTGATTGAGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttcttctcttgagtcttcacatgatgcaggagagagccagtctagtgctagctagcaaggtctttaacttatttatatatggcttacacatatcag

Basic information

species Arabidopsis thaliana
transcript AT4G27050.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083898|gb|DR379657.1|DR379657
EST:     AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG                         GTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
genomic: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
EST: gi|164228814|gb|ES057171.1|ES057171
EST:     GAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG                         GTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
genomic: GAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
EST: gi|125091383|gb|EL149206.1|EL149206
EST:     AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG                         GTGTTTTACTATTGTTGTGATTTGCCGGTG
genomic: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTG