1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagcttcttctcttgagtcttcacatgatgcaggagagagccagtctagtgctagctagcaaggtctttaacttatttatatatggcttacacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTATCTATCGAAAGTGACAAGGAAAAAGGCTGGGAAGTAATGCCAAGGCTGC
species | Arabidopsis thaliana |
transcript | AT4G27050.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG GTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTAEST: gi|164228814|gb|ES057171.1|ES057171
genomic: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
EST: GAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG GTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTAEST: gi|125091383|gb|EL149206.1|EL149206
genomic: GAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTA
EST: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAG GTGTTTTACTATTGTTGTGATTTGCCGGTG
genomic: AGGCGATCAGAACCATTAAGATCCTTCACTTGTCTCCTAGTTCTCTCGAGgtcagcttct ... cacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTG
ctagtgctagctagcaaggtctttaacttatttatatatggcttacacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTATCTATCGAAAGTGACAAGGAAAAAGGCTGGGAAGTAATGCCAAGGCTGC
ggcttac putative branch site (score: 3)
tctttaacttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcttcttctcttgagtcttcacatgatgcaggagagagccagtctagtgctagctagcaaggtctttaacttatttatatatggcttacacatatcagGTGTTTTACTATTGTTGTGATTTGCCGGTGTTGGAAGATCTCGTTAATTTATCTATCGAAAGTGACAAGGAAAAAGGCTGGGAAGTAATGCCAAGGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA