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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttttccccttctgtaaactgtcccgtgagcatttgctattgaaagatatggaggatgttgagttactttcctctgattgtttagatactataagccgtgtcttggtgtttagtgttttggtttcaatgtcattcttctagtacaatgatagtttatgagttgttaatacattgttattaattcacagAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGACTCCCAATGTGAGAAAGCGCGTTGATGCCTTGAGGGATATACAG

Basic information

species Arabidopsis thaliana
transcript AT4G26110.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831827|gb|CK121511.1|CK121511
EST:     CTCTTAAGGACGAGGATCGAGCTGGCCTTGTCAATGCTCTAAAG                         AACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTG
genomic: CTCTTAAGGACGAGGATCGAGCTGGCCTTGTCAATGCTCTAAAGgtgagttttt ... taattcacagAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTG
EST: gi|164133973|gb|ES021891.1|ES021891
EST:     CTCTTAAGGACGAGGATCGAGCTGGCCTTGTCAATGCTCTAAAG                         AACAAGCTGCAGAATCTGGCTGGTCAGCGTT
genomic: CTCTTAAGGACGAGGATCGAGCTGGCCTTGTCAATGCTCTAAAGgtgagttttt ... taattcacagAACAAGCTGCAGAATCTGGCTGGTCAGCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctagtacaatgatagtttatgagttgttaatacattgttattaattcacagAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGACTCCCAATGTGAGAAAGCGCGTTGATGCCTTGAGGGATATACAG
                                          tattaat  putative branch site (score: 2)
                           ttgttaatacattgtt  TA-rich tract