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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatcattttgactgaagctaaaatttaaattatatgagaaatgcgataagttaattgtagtatcgtgtgagtgtacctacag

Basic information

species Arabidopsis thaliana
transcript AT4G25050.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125080661|gb|EL142181.1|EL142181
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTG
EST: gi|125292066|gb|EL306151.1|EL306151
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGT
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGT
EST: gi|125122813|gb|EL169262.1|EL169262
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGCCTTCAAATCAGTTGTGCC                         GCGAAAGCAGA
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGA
EST: gi|124909401|gb|EH983481.1|EH983481
EST:     CGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: CGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|125136827|gb|EL176857.1|EL176857
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGAC
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGAC
EST: gi|125136138|gb|EL176168.1|EL176168
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTG
EST: gi|125159120|gb|EL187390.1|EL187390
EST:     TCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGA
genomic: TCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGA
EST: gi|125003221|gb|EL075490.1|EL075490
EST:     ACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: ACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124757872|gb|EH848002.1|EH848002
EST:     AACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: AACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|125054138|gb|EL124976.1|EL124976
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAG
EST: gi|124834644|gb|EH919083.1|EH919083
EST:     CGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAAGAACAATT
genomic: CGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAA-GAACAATT
EST: gi|124792043|gb|EH881722.1|EH881722
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACA
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACA
EST: gi|124727134|gb|EH818536.1|EH818536
EST:     CCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: CCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124735155|gb|EH826557.1|EH826557
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTG
EST: gi|125304803|gb|EL318888.1|EL318888
EST:     CAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAAGAACAA
genomic: CAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAA-GAACAA
EST: gi|124922656|gb|EL000924.1|EL000924
EST:     TCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GTCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATT
genomic: TCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagG-CGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATT
EST: gi|125299522|gb|EL313607.1|EL313607
EST:     TTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: TTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124815511|gb|EH900377.1|EH900377
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAA
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAA
EST: gi|125233875|gb|EL247960.1|EL247960
EST:     CAAATACAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: CAAAT-CAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124794650|gb|EH884329.1|EH884329
EST:     AGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAAACAATT
genomic: AGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAA-CAATT
EST: gi|86081858|gb|DR377617.1|DR377617
EST:     GT-STTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|164110887|gb|EL979345.1|EL979345
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGC
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGC
EST: gi|125042958|gb|EL115227.1|EL115227
EST:     TCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: TCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|116456880|gb|EG499472.1|EG499472
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|125024777|gb|EL097046.1|EL097046
EST:     CAACAAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAG
genomic: CAAC-AAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAG
EST: gi|47829114|gb|CK118798.1|CK118798
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|86076060|gb|DR371817.1|DR371817
EST:     GT-STTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|116474769|gb|EG517361.1|EG517361
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|116456879|gb|EG499471.1|EG499471
EST:     TTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: TTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124787924|gb|EH877603.1|EH877603
EST:     CCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: CCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|164116757|gb|ES110956.1|ES110956
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAAT
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAAT
EST: gi|124990063|gb|EL062332.1|EL062332
EST:     CAACAAAGAGCCTTCGTCTTC-AATCAGTTGTGCC                         GCG-AAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
genomic: CAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTG
EST: gi|124896182|gb|EH972396.1|EH972396
EST:     CGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAGTGAAGTGACATTGTAAAAGAACAATT
genomic: CGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAGTGA-GTGACATTGTAAAAGAACAATT
EST: gi|125054547|gb|EL125165.1|EL125165
EST:     CAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAGAAAG
genomic: CAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAGAAAG
EST: gi|125274639|gb|EL288724.1|EL288724
EST:     GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCC                         GCGAAAGCAGAGACGGTGCAG
genomic: GTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCgtaagtaatc ... gtacctacagGCGAAAGCAGAGACGGTGCAG