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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCCTGATGCTATCGGCCACCACATCCAAAATGTTACCGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGAACTACACATGGGgtatacaattacttatactttctctatatatatcaacatattatttaacactatatatatctatacacaatattatggtgtatgtgtgaaactagggttt...

Basic information

species Arabidopsis thaliana
transcript AT4G23680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125111660|gb|EL163049.1|EL163049
EST:     CGAACATGACTCTCACGGGTCTATCAGAAGTTGGAACTACACATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGAGA
genomic: CGAACATGACTCTCACGGGTCTATCAGGAGTTGGAACTACACATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGGAGA
EST: gi|125297029|gb|EL311114.1|EL311114
EST:     ACTCTCACGGGTCTATCAGGAGTTGGAACTACACTATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACC
genomic: ACTCTCACGGGTCTATCAGGAGTTGGAACTACAC-ATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACC
EST: gi|124762144|gb|EH852274.1|EH852274
EST:     TCTATCAGGAGTTGGAACTACACATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCA
genomic: TCTATCAGGAGTTGGAACTACACATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCA
EST: gi|124921804|gb|EL000155.1|EL000155
EST:     TATCAGGAGTTGGAACTACACATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGGTAGACGATGAGACCA
genomic: TATCAGGAGTTGGAACTACACATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCA
EST: gi|164223544|gb|ES095580.1|ES095580
EST:     TGGAACTACACATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCA
genomic: TGGAACTACACATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAGACCA
EST: gi|124757975|gb|EH848105.1|EH848105
EST:     TCTATCAGGAGTTGGAACTACACATGGG                         ATGGAAAGGAGGAGGTGTTCAAGGTAGAGAAGAGAGATAGACGAATGAGAC
genomic: TCTATCAGGAGTTGGAACTACACATGGGgtatacaatt ... gtgtgtaaagATGGAAAGGAGGAGGTGTTCAAGG-AGAGAAGAGAGATAGACGA-TGAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTCCCTGATGCTATCGGCCACCACATCCAAAATGTTACCGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGAACTACACATGGGgtatacaattacttatactttctctatatatatcaacatattatttaacactatatatatctatacacaatattatggtgtatgtgtgaaactagggttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaata